About MassVision
================

.. image:: https://raw.githubusercontent.com/jamzad/SlicerMassVision/main/Screenshot1.png
   :width: 560
   :align: center


**MassVision** is a module developed in `3D Slicer <https://www.slicer.org>`_ platform for end-to-end AI-driven analysis of Mass Spectrometry Imaging (MSI) data. 

The functionalities include data exploration via various targeted, untargeted, and local-contrast visualization, co-localization with reference modality like histopathology annotations, dataset curation with spatial- and spectral-guidance, multi-slide dataset merge via feature alignment, spatial and spectral filtering, statistical analysis, AI model training and validation, and whole-slide MSI model deployment.


.. image:: https://raw.githubusercontent.com/jamzad/SlicerMassVision/main/docs/source/Images/functions.png
   :width: 560
   :align: center


How to Cite
-----------
Thank you for choosing MassVision for your study! Please cite the following MassVision paper in your publications:

Jamzad, A.; Warren, J.; Syeda, A.; Kaufmann, M.; Iaboni, N.; Nicol, C.; Rudan, J.; Ren, K.; Hurlbut, D.; Varma, S.; Fichtinger, G.; Mousavi, P. MassVision: An Open-Source End-to-End Platform for AI-Driven Mass Spectrometry Imaging Analysis. Analytical Chemistry 2025. `https://doi.org/10.1021/acs.analchem.5c04018 <https://doi.org/10.1021/acs.analchem.5c04018>`_.